PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009097P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 296aa    MW: 33239.7 Da    PI: 5.9916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009097P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23122183159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDg++WrKYGqK++ ++++pr+Y+rCt++    C+++k+v+r ++ p  + +tY g+H+++
  MELO3C009097P1 122 VDDGHAWRKYGQKTILNAKYPRNYFRCTHKydqACQATKQVQRLQDHPPKFRTTYYGNHTCS 183
                     59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23108183IPR003657WRKY domain
PROSITE profilePS5081119.566117180IPR003657WRKY domain
SuperFamilySSF1182904.71E-23118183IPR003657WRKY domain
SMARTSM007741.5E-35122184IPR003657WRKY domain
PfamPF031065.8E-24123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDCSWPDTSP FDRRKAADEL LRGRELAQQL RAYLQRSSTP ASQDLLTRIL SSFSKTLSIL  60
NHRCDSDDIN GSIVDSPEDH GSRKSEESGD SCKSSTPNND RRGCYKRRKS CQSWARETCS  120
LVDDGHAWRK YGQKTILNAK YPRNYFRCTH KYDQACQATK QVQRLQDHPP KFRTTYYGNH  180
TCSNFLKASD IVLGSSNFDD SCGVLLSFDT TAAPNFFLPH HPTLVKKEEV VTPEAGSGRD  240
DEAVCSPSDY MSTADDHLSE VFMGSVVDFE DDVLPFHFDP INFNNTPSDP LDLPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-23122182868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840210.0GU984021.1 Cucumis sativus WRKY protein (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442314.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3B5E30.0A0A1S3B5E3_CUCME; probable WRKY transcription factor 70
STRINGXP_008442314.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-42WRKY DNA-binding protein 70