PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008790P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 331aa    MW: 37234.2 Da    PI: 6.9353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008790P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.22.6e-56121391129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee+v++yL++k+ +  +++ ++i e+d++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkd+e+++ 
  MELO3C008790P1  12 LPPGFRFHPTDEEIVTYYLAQKIVDAAFTA-TAIGEADLNKCEPWDLPQKAKMGEKEWYFFCQRDRKYPTGMRTNRATQTGYWKATGKDREIFKG 105
                     79*************************999.88***************99999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     k+ l g+kktLvfykgrapkgekt+Wvmhe+rle
  MELO3C008790P1 106 KSVLAGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 139
                     9999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-628165IPR003441NAC domain
PROSITE profilePS5100558.79212164IPR003441NAC domain
PfamPF023656.7E-2913138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEPQLITPV NLPPGFRFHP TDEEIVTYYL AQKIVDAAFT ATAIGEADLN KCEPWDLPQK  60
AKMGEKEWYF FCQRDRKYPT GMRTNRATQT GYWKATGKDR EIFKGKSVLA GMKKTLVFYK  120
GRAPKGEKTN WVMHEFRLEP KFAHFLRLPR PVKDDWVVCR VFHKNPTMAA TTPVRRIQTT  180
SDFSSSLPPL IDPPATTHIP INSGGLDDFE VKCRPSGQSD YCLKYISTDS TNNDRHHYHQ  240
PAATLPLPPA TTTAATTMNV SYAPSVPDNG FFSFDQLAAV GGTMPLTTPP TMECKMEQTS  300
WSMMSGVTQD VSSSIDNSGY DLDVWDYYEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-5311676168NO APICAL MERISTEM PROTEIN
1ut4_B8e-5311676168NO APICAL MERISTEM PROTEIN
1ut7_A8e-5311676168NO APICAL MERISTEM PROTEIN
1ut7_B8e-5311676168NO APICAL MERISTEM PROTEIN
4dul_A8e-5311676168NAC domain-containing protein 19
4dul_B8e-5311676168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441966.10.0PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK449e-97NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1S3B4420.0A0A1S3B442_CUCME; NAC domain-containing protein 79-like
STRINGXP_008441966.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-99Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]