PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008668P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 318aa    MW: 35917.6 Da    PI: 7.9384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008668P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-14146192455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f+ Lr ++P+       +++Ka+ L  Av YI++L+
  MELO3C008668P1 146 THVEAERQRREKLNDRFNSLRIVVPNV-----SRMDKASLLSDAVSYINELE 192
                     89************************6.....4****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-1167133IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.07E-12140192No hitNo description
PROSITE profilePS5088817.028142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-16142205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-11146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKQDPTSSIQ SKLQSLILNP QLHNWSFAIF WNLTTTPYSS HSYFHPHSLF PSSAAHSLTS  60
SPHFPFSDLT TAAAVWLNHP SLFFQQTHRG KQLQSFGIKT LVSIPTPNGV LELGSPDSIP  120
HDSELLERIG TEFGFNLKKR ENNPSTHVEA ERQRREKLND RFNSLRIVVP NVSRMDKASL  180
LSDAVSYINE LEMKISEMES RVSKKKKKNG VDENEMEEEA SSRDRRERGI EIDVKIIGGD  240
RAVIRVESRN LSYAVAKLME ALRDLGLKVE HGSMWNWKDL TLQDLVVRVP SGHGYCSDEG  300
IKRALLAILE HGTNINY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-21144217677Transcription factor MYC2
5gnj_B4e-21144217677Transcription factor MYC2
5gnj_E4e-21144217677Transcription factor MYC2
5gnj_F4e-21144217677Transcription factor MYC2
5gnj_G4e-21144217677Transcription factor MYC2
5gnj_I4e-21144217677Transcription factor MYC2
5gnj_M4e-21144217677Transcription factor MYC2
5gnj_N4e-21144217677Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818460.0LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441948.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S3B4K70.0A0A1S3B4K7_CUCME; transcription factor MYC3-like
STRINGXP_008441948.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-35bHLH family protein