PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008128P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 374aa MW: 42890.6 Da PI: 6.9602

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008128P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	80	121	3	44
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 ++k++rr+++NReAAr+sR RKk ++++Le+ +L + ++ MELO3C008128P2 80 DDKVQRRLAQNREAARKSRMRKKVYVQQLETSRMKLAQLEEE 121 589***************************865555544443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-5	78	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	80	124	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-7	81	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-8	82	127	No hit	No description
SuperFamily	SSF57959	2.41E-7	82	125	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.3E-29	167	242	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MIGQQSMSSS STQLYASRMG IYEPFHQINS WPTNAFGSRL DTSISPINKV DDCVDNKPEF 60 VPFESMDHLE SSEEMNKPID DKVQRRLAQN REAARKSRMR KKVYVQQLET SRMKLAQLEE 120 ELERTRQQKG TGCLVDTSHF GFSGLVNPGI AAFEMEYNHW VEEQQRQINE LRKALQVHTT 180 DIELQILVES SLNHYHNLFC MKAKVAKADV FYLMSGVWRS SAERFFLWIG GFRPSELLNV 240 LKPYFEPLNE QQRADIHKLQ QSSRQAEDAL TQGMEKLHQN LSLSIAGDPV GSYISQMGDG 300 MEKLEALENF ISQPSVCYSF LEQADHLRQQ TLKRMSHLLT TRQAAQGLLA LGEYFHRLRV 360 LSSLWATRPR EPA*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MIGQQSMSSS STQLYASRMG IYEPFHQINS WPTNAFGSRL DTSISPINKV DDCVDNKPEF  60
VPFESMDHLE SSEEMNKPID DKVQRRLAQN REAARKSRMR KKVYVQQLET SRMKLAQLEE  120
ELERTRQQKG TGCLVDTSHF GFSGLVNPGI AAFEMEYNHW VEEQQRQINE LRKALQVHTT  180
DIELQILVES SLNHYHNLFC MKAKVAKADV FYLMSGVWRS SAERFFLWIG GFRPSELLNV  240
LKPYFEPLNE QQRADIHKLQ QSSRQAEDAL TQGMEKLHQN LSLSIAGDPV GSYISQMGDG  300
MEKLEALENF ISQPSVCYSF LEQADHLRQQ TLKRMSHLLT TRQAAQGLLA LGEYFHRLRV  360
LSSLWATRPR EPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	1e-153	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	1e-153	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441233.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_008441234.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_008441235.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	1e-136	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A1S3B3L8	0.0	A0A1S3B3L8_CUCME; transcription factor TGA7-like isoform X1
STRING	XP_008441233.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-134	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]