PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007988P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 271aa MW: 29674.2 Da PI: 9.0428

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007988P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.7	6.1e-34	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl MELO3C007988P1 19 KQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.699	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-17	18	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-32	18	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-26	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-9	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-24	105	151	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDPTNGNNAT SKNPNLASKQ RLRWTHDLHE RFVNAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKKTDKK DSSDILSNID GSSGMQITEA LKLQMEVQKR 120 LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ KLSGVLSGAP AASAFTAPAS GDNCPEADKN 180 DPPTPASTSE FPRQEKVSKE RAQGKSVSID DSFSSHHEPL TPDSGCHSSP SESARPVKKQ 240 RQDMDGAFAK SEMILAHQIL ESSLNSTHKE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-23	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-23	19	76	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU284118	0.0	EU284118.1 Cucumis sativus putative myb family transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440942.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_008440943.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_008440944.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_016899325.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	1e-117	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1S3B2B2	0.0	A0A1S3B2B2_CUCME; protein PHR1-LIKE 1-like
STRING	XP_008440942.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-89	G2-like family protein