PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007905P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 335aa    MW: 37188.2 Da    PI: 6.7257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007905P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0961108354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  MELO3C007905P1  61 IQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 108
                     56789********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.98258108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1359128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-759113No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1260131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-761108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-764114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEQWKSGDFS QSSVPADLVP SSSLQPQPLA VSSTRHHSNQ LTESRLRTDA EVKDPIAVRK  60
IQKADREKLR RDRLNEHFLE LGNTLDPDRP KNDKATILTD TIQMLKDLTA EVHRLKADYE  120
ALSEESRELT QEKNELREEK ASLKSDIENL NAQYQQRLRV MFPWATMDPS VVMGPPYSYP  180
VPVPVPPGPI PMHPSLQPFT FFGNQNPGAI PNPCSTFVPY TAAANHPIDQ PSAQYASNSH  240
ISSKQDSRSK SSDQHRRSNV ERCDESTDVA TDLELKMPGS STQQDASSGS KKAKQSQRKE  300
KSVTDCSSSS RFSSSQVLQD SSSNSVGDIP KQNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440819.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT236e-85BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3B2M70.0A0A1S3B2M7_CUCME; transcription factor bHLH121
STRINGXP_008440819.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-70bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]