PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007720P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25351.5 Da PI: 10.9577 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 47 | 97 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +E++RR+ri +++Lr +lP++sk+++ Kl Ka +L ++++ +k+L MELO3C007720P1 47 KHRLAEQNRRNRISGQYATLRAILPSLSKTDKSKLKKAFVLSETIRGVKEL 97 79************************99*****************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-10 | 38 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.373 | 43 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.60E-7 | 46 | 102 | No hit | No description |
Pfam | PF00010 | 4.5E-9 | 46 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-10 | 47 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-6 | 49 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00324 | 140 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.6E-4 | 140 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQSIPSYPTS GTMHQIYPQA QAPMINPYSC PISSFPRKEP KLNAAVKHRL AEQNRRNRIS 60 GQYATLRAIL PSLSKTDKSK LKKAFVLSET IRGVKELKKL VSEKRVANRE FRDCGIPSGA 120 DRLTLEQCNG GEGMVKAVMS CEDRQDIMAE LAKALKTMKV KLVRAEMVTV GGRNKFSLWI 180 QGPKEGHGGI KRVLEAVMKR PSWIARKPRN VWQSRASTDN NFNGVAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440558.1 | 1e-169 | PREDICTED: transcription factor bHLH131-like | ||||
TrEMBL | A0A1S3B0Y8 | 1e-168 | A0A1S3B0Y8_CUCME; transcription factor bHLH131-like | ||||
STRING | XP_008440558.1 | 1e-169 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 7e-25 | bHLH family protein |