PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007679P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 327aa    MW: 35821.3 Da    PI: 5.2634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007679P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-14148194455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka+iL  A+ YIk+Lq
  MELO3C007679P1 148 EHVLAERKRREKLSQRFVALSALIPDL-----KKMDKASILGDAITYIKDLQ 194
                     6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.624144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17148206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-15149198No hitNo description
SuperFamilySSF474591.14E-16149205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEISSANWLS EMELESSFMN DLEMNPFECT LEELSSFQTF SDESYTSHVD LDNNSVQTPT  60
APPPAKQART SGSSRRIASM ATSSSSSQII SFGNVELSSM VAQPSYDNKN NNKTPNYYCS  120
PNKNHGVGIK RSVAAMNSNN RSPLVAQEHV LAERKRREKL SQRFVALSAL IPDLKKMDKA  180
SILGDAITYI KDLQERLKVA NEQAAKATVE SVVFVNKSED ASTIVVSDDS SEENSSSSSD  240
GAIPDVEARV SGKDVLLKIH CKKCTGCLSN ILNQIEKLNL TVLNSSALPF GNFRVDITII  300
AQMDDDFSIT VKELVQKLRQ ASLKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14149202970Transcription factor MYC2
5gnj_B2e-14149202970Transcription factor MYC2
5gnj_E2e-14149202970Transcription factor MYC2
5gnj_F2e-14149202970Transcription factor MYC2
5gnj_G2e-14149202970Transcription factor MYC2
5gnj_I2e-14149202970Transcription factor MYC2
5gnj_M2e-14149202970Transcription factor MYC2
5gnj_N2e-14149202970Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440467.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016899206.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4DT890.0A0A1S4DT89_CUCME; transcription factor bHLH18-like
STRINGXP_008440467.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-51bHLH family protein