PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007576P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 296aa    MW: 31995.3 Da    PI: 10.1923
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007576P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31224281359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  MELO3C007576P1 224 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPAMLVVTYEGEHNHT 281
                     99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.6E-18173220IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-33210281IPR003657WRKY domain
PROSITE profilePS5081130.997217283IPR003657WRKY domain
SuperFamilySSF1182906.8E-27219281IPR003657WRKY domain
SMARTSM007745.7E-38222282IPR003657WRKY domain
PfamPF031064.9E-27224280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAVDLISHLS PLPNMEPNAV QEATSGLESV HKLIRLLSIP NPHSLPSSSQ SPIDFPSDCR  60
AAADAAVSKF KKVISLLGRS RLGHARFRRA PLPQQPHYVT PIQQIPPHPH PHLNSNNSND  120
ESLNFSAHNS FISSLTGDAD TKHPSSSSSP FLISNLSQVS SAGKPPLSSS SLKRKCSSDN  180
LGSGKCAAAS SSARCHCSKK RKLRVKRVVR VPAISLKMAD IPPDDYSWRK YGQKPIKGSP  240
HPRGYYKCSS VRGCPARKHV ERAVDDPAML VVTYEGEHNH TLSLPETSSL ILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21210282273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440311.10.0PREDICTED: probable WRKY transcription factor 15
RefseqXP_008440312.10.0PREDICTED: probable WRKY transcription factor 15
RefseqXP_008440313.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221762e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A1S3B1K00.0A0A1S3B1K0_CUCME; probable WRKY transcription factor 15
STRINGXP_008440311.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-45WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]