PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C007470P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 202aa MW: 22588.9 Da PI: 7.2168 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.1e-30 | 107 | 165 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C+s gC vkk+ver+++d ++v++tYeg Hnhe MELO3C007470P1 107 LDDGYKWRKYGKKSVKNSPHPRNYYKCSSGGCGVKKRVERDRDDSSYVITTYEGVHNHE 165 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-32 | 94 | 167 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 100 | 167 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.491 | 102 | 167 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-34 | 107 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-24 | 108 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MNSLQNPTFF FDHHQQLDQD SSSSFMDFLN FSGYPLPDFG LEAETTMFSL SEAGTGDGSR 60 SMKATSIDNN TIDDGWFEGK GVKRKKERGN GCNHKVAFIT KSELEILDDG YKWRKYGKKS 120 VKNSPHPRNY YKCSSGGCGV KKRVERDRDD SSYVITTYEG VHNHESPFLM YSNGSKLCHP 180 HPQPICPNSS SPDPYSSTTT L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-26 | 100 | 167 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-26 | 100 | 167 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-122 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-122 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440131.1 | 1e-150 | PREDICTED: probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1S3AZZ8 | 1e-149 | A0A1S3AZZ8_CUCME; probable WRKY transcription factor 51 | ||||
STRING | XP_008440131.1 | 1e-150 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26170.1 | 4e-39 | WRKY DNA-binding protein 50 |