PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007098P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 241aa MW: 27293.8 Da PI: 7.8636

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007098P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.3e-40	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkC +dC++ap+fpa+qpkkf++vh+++Gasnv+k+lkal+ +ere++++slv+eAear+rdPv+G+v++i++lq +l+ l++el+ MELO3C007098P1 15 PCASCKFLRRKCDADCIFAPHFPADQPKKFEVVHRIYGASNVSKILKALRYDEREETVNSLVFEAEARLRDPVRGCVALISDLQDRLQMLQTELS 109 7********************************************************************************************** PP DUF260 96 llkee 100 +++e MELO3C007098P1 110 IARRE 114 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.718	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-39	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSSFNSQPQK TYGSPCASCK FLRRKCDADC IFAPHFPADQ PKKFEVVHRI YGASNVSKIL 60 KALRYDEREE TVNSLVFEAE ARLRDPVRGC VALISDLQDR LQMLQTELSI ARRELSSYMP 120 SELPPNYSSY MASKLPPNWS YMASKLRPNS SYMASKLRPN LSYMISELLP KWPGESSTSQ 180 RPMMEGQSSS QRVDGFGTTN YYGINNDDDR RHVVFQHPVT TTEQLLPATE QPPSQDSIDF 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-38	13	123	9	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-38	13	123	9	119	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439580.1	1e-180	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q9FKZ3	4e-43	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1S3AYN9	1e-179	A0A1S3AYN9_CUCME; LOB domain-containing protein 12-like
STRING	XP_008439580.1	1e-180	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-45	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]