PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006863P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 347aa    MW: 36696.4 Da    PI: 9.1431
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006863P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142e-3585187366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                       k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt                                
  MELO3C006863P1  85 QTKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipttsparpngeiseap 179
                     5799***********************************************************54444444444444443222222222222111 PP

             TCP  66 .......s 66 
                            +
  MELO3C006863P1 180 rkrrrkgP 187
                     11111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.54590144IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-2890165IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEVNQNHRL YEKEGSSNGG YENLTNSTVD SSNPAKAEDV LSDRHVGPPS TAVPKKEKEG  60
IMEHGLDIMP PLSLSQVPST TVAKQTKRPS KDRHTKVEGR GRRIRMPAAC AARIFQLTRE  120
LDHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVSVGGT LKIPTTSPAR PNGEISEAPR  180
KRRRKGPNSE SNDCNDQASV SSGLTPIAPM AAYGAGLVPF WGSAGGVTEP FFMVPGTSNN  240
HQPQLWAVPA RPLSNLVSSM NPGLQFGGVV PVLTRAVSNG SSGLESGSSP AMVSPSLIPG  300
TVSAPASTSG STQMLRDFSL EIYEKKELEF MGRPSPAKSK TPCSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439154.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT892e-61TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1S3AYR70.0A0A1S3AYR7_CUCME; transcription factor TCP19
STRINGXP_008439154.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-62TCP family protein