PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006789P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 541aa    MW: 58581.3 Da    PI: 7.5805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006789P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08359406455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MELO3C006789P2 359 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 406
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-10353410No hitNo description
SuperFamilySSF474597.33E-17353425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16355423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5359406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEKEFFMNDG GCSFYGMEIQ PNELNSSGGL LNPNWENSMD HSDLFESTLS SIVSSPANSH  60
IIGGGGGGGD NLMMRELIGR LGSICNSGEI SPHSYIGGTN NNSTNTSCYN TPLNSPPKLN  120
LSSIMESQIR GNLIPHPQNL APFSTDPGFA ERAARFSCFG NRNLGGLNGQ LGSNETQELS  180
NRSVAGAGVE SGKLSRVSSN KSFNIGGIGS PQMGVQEGDQ SPVQKGNSMP IPNKKVLNRF  240
SRSSTPENAG DSREGSSVSE QIPVGELGLK CKAETNTRKR KSVQTGQAKD AKAAVENQNG  300
KKIKPDEVTK KEIDGAKGKA EAKASGDANQ KQNNDSSKPP EPPKDYIHVR ARRGQATDSH  360
SLAERVRREK ISKRMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN  420
PRMDFNMETL VPKDIFKGPG SSSHTVYPMD SSVPQFAYDY QSMHVPPLHS GIPNGTEKQF  480
ASANDVMQRN LSGQMPNGYN EVVNGIQVSK FWEDELHTVV QMGYGQNQLQ NANDEMKSEL  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281TRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439060.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1S3AXF60.0A0A1S3AXF6_CUCME; transcription factor bHLH62-like
STRINGXP_008439060.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-63bHLH family protein