PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006081P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 332aa    MW: 36685.8 Da    PI: 6.3471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006081P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30154212259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp ++++tY+ eHnh+
  MELO3C006081P1 154 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 212
                     79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-31144214IPR003657WRKY domain
PROSITE profilePS5081134.773148214IPR003657WRKY domain
SuperFamilySSF1182902.88E-26151214IPR003657WRKY domain
SMARTSM007747.6E-37153213IPR003657WRKY domain
PfamPF031068.6E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEVDWDLHAV VRGYSAAPSA ATIVPSSSSF SNNSVPFSFG RDLTNNQTKN HFFSLQDPFQ  60
PSNCNSTQEL HELFKPFFPK SQPSSSSPTP PPPPPPPAAP PLLSSPAPKI LTHHKQSTHL  120
PKQLHSTSVS APRSKRRKNQ LKKVCQVPAE SLSSDIWAWR KYGQKPIKGS PYPRGYYRCS  180
SSKGCMARKQ VERNRSDPGM FIVTYTAEHN HPAPTHRNSL AGSTRQKPVT PTTTASGSEK  240
LDPKQPVCSS EEQSTITESK EEKEELLMAE DEEDDDLGVS DLIVNDDFYV GFEELDSPIT  300
DDCFSDQFPA NFDLPWLFNG NPDGEIVKLP C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-23138215280Disease resistance protein RRS1
5w3x_D9e-23138215280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840180.0GU984018.1 Cucumis sativus WRKY protein (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437986.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A1S3AVV50.0A0A1S3AVV5_CUCME; WRKY transcription factor 22
STRINGXP_008437986.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-66WRKY family protein