PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006008P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 175aa MW: 18199.1 Da PI: 8.9917 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2e-39 | 31 | 89 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprC+s+ntkfCyynnysl+qPryfCkaCrryWt+GG+lrn+PvGgg+rkn+k MELO3C006008P1 31 PQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNRK 89 6899*****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 30 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.845 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEAMMESGGN GGGGGGGGGG GGGGLKGKGR PQEQLNCPRC KSSNTKFCYY NNYSLTQPRY 60 FCKACRRYWT EGGSLRNIPV GGGSRKNRKP TGSVSGSGSV HHPQPQPQVY QAQDLNLGFA 120 TAEATTAMEN GGHGGFGCYI PNLMPYSGRE TAAVEENSGN NGYWNGMFGG GPPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016898925.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF3.7 | ||||
Swissprot | Q43385 | 1e-35 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A1S4DT96 | 1e-122 | A0A1S4DT96_CUCME; dof zinc finger protein DOF3.7 | ||||
STRING | XP_008437866.1 | 1e-122 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 1e-35 | Dof family protein |