PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005978P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 262aa MW: 29255.8 Da PI: 8.1413 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 108 | 162 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+Lt rqV vWFqNrRa+ k MELO3C005978P1 108 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTK 162 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 4.8e-41 | 108 | 197 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l MELO3C005978P1 108 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 197 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.3E-19 | 1 | 81 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 91 | 158 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-20 | 94 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.734 | 104 | 164 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-17 | 106 | 168 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-16 | 108 | 162 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.93E-16 | 108 | 165 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 139 | 162 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.0E-11 | 164 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.7E-27 | 164 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGGRDDDLGL TLSLGFGVTT QPTHMQRPSM HNHLRKTSWN ELFQFSDRNA DSRSFLRGID 60 VNRLPTGVDG EEENGVSSPN TEAEAERASC SRGSDDEDGG GGDGDASRKK LRLSKEQSMV 120 LEETFKEHNT LNPKQKLALA KQLNLTPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCENL 180 TEENRRLQKE VQELRALKLS PQLYMHMNPP TTLTMCPQCE RVAVSSSSST SAATTTRHPA 240 AAGVQRTSMA INPWAVLPIQ R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 112 | SRKKLRL |
2 | 156 | 164 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-172 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-172 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437820.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein HAT3-like | ||||
Swissprot | P46602 | 1e-99 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A1S3AUW7 | 1e-159 | A0A1S3AUW7_CUCME; homeobox-leucine zipper protein HAT3-like | ||||
STRING | XP_008437820.1 | 1e-160 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 2e-79 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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