PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005928P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 363aa    MW: 41744.9 Da    PI: 6.7666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005928P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13190241155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  MELO3C005928P4 190 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 241
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-16180251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-9188238No hitNo description
Gene3DG3DSA:4.10.280.104.4E-13188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.881189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10190241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MLCIEWLCVI SPGWILKYIL CTSNERVLFL IIYFTSHSGF YSFQLYGEYS ETGCSEQEFS  60
NLGFEESEEV CLLTSSLEDK IPFLQMLQSV ESQSFKEPNF QSLLKLQHLN KPWEEGVSKI  120
QELVELFSSP INSETKDQNQ PPNSDRVFSE CNQNQGLSQT QMTKFPPVIK ERRKRKRSKP  180
TKNKEEVESQ RMTHIAVERN RRRQMNDHLN VIKSLIPTSY VQRGDQASII GGAIDFVKEL  240
EQLLESLEAL RKERKGAEGE CKDEQSEVRV ASNRRIGEGV CAELRSEVAE IEVTMIQTHV  300
NLKIRCRKRQ GQLLKVIVAL EDLRLTVLHL NITSQTAATM LYSFNLKVLL CYYSLLPFSF  360
LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RRKRKR
2172179RKRKRSKP
3190201RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437748.10.0PREDICTED: transcription factor bHLH67 isoform X1
SwissprotO810372e-71BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A1S3AVB50.0A0A1S3AVB5_CUCME; transcription factor bHLH67 isoform X1
STRINGXP_008437748.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]