PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005928P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 330aa    MW: 37766.2 Da    PI: 6.6703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005928P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13157208155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  MELO3C005928P3 157 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 208
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-16147218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-9155205No hitNo description
Gene3DG3DSA:4.10.280.103.8E-13155211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.881156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MERLQGPINP CLYGEYSETG CSEQEFSNLG FEESEEVCLL TSSLEDKIPF LQMLQSVESQ  60
SFKEPNFQSL LKLQHLNKPW EEGVSKIQEL VELFSSPINS ETKDQNQPPN SDRVFSECNQ  120
NQGLSQTQMT KFPPVIKERR KRKRSKPTKN KEEVESQRMT HIAVERNRRR QMNDHLNVIK  180
SLIPTSYVQR GDQASIIGGA IDFVKELEQL LESLEALRKE RKGAEGECKD EQSEVRVASN  240
RRIGEGVCAE LRSEVAEIEV TMIQTHVNLK IRCRKRQGQL LKVIVALEDL RLTVLHLNIT  300
SQTAATMLYS FNLKVLLCYY SLLPFSFLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRKRKR
2139146RKRKRSKP
3157168RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437748.10.0PREDICTED: transcription factor bHLH67 isoform X1
SwissprotO810375e-72BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A1S3AVB50.0A0A1S3AVB5_CUCME; transcription factor bHLH67 isoform X1
STRINGXP_008437748.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]