PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005843P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 348aa    MW: 38017.8 Da    PI: 5.7668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005843P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30179237259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++itY+g+H h+
  MELO3C005843P1 179 TDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCGARKQVERSNVDPETFIITYTGDHSHP 237
                     69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-30165239IPR003657WRKY domain
PROSITE profilePS5081132.684173239IPR003657WRKY domain
SuperFamilySSF1182901.83E-25173239IPR003657WRKY domain
SMARTSM007746.4E-36178238IPR003657WRKY domain
PfamPF031062.0E-25180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAAGNDDWDL SAVVRSCNSA ASATDPTSAA AESALSCLAS LTFDDDPDDV AFSFSDIFQP  60
KQPNGGFHEL HQAFVSFLPN PSATDTTTTT TTTVTAVPVS EPEIPYPTPP NRHFRQGIKP  120
IRPNPPPVAL QQHPHHRQPP FSPDLPNSPM TQSLIPKSRK RQNQQKRRVC HVTADNLSTD  180
MWAWRKYGQK PIKGSPYPRN YYRCSSSKGC GARKQVERSN VDPETFIITY TGDHSHPRPT  240
HRNSLAGSSR NRSSSSSSRH PTPGDFDPSM TASALVPSSS SPAASPITPL NDYEGPTGEK  300
DGEMFEDMPI DSDEEEDDED ILIPNLTVRD EIFVGFEEVG RGRGRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191802401880Disease resistance protein RRS1
5w3x_D6e-191802401880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437536.10.0PREDICTED: probable WRKY transcription factor 27 isoform X1
TrEMBLE5GBD40.0E5GBD4_CUCME; WRKY transcription factor
STRINGXP_008437536.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-46WRKY DNA-binding protein 27