PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005734P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35679.4 Da PI: 4.748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 113 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g MELO3C005734P1 113 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 163 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.78E-33 | 113 | 170 | No hit | No description |
PROSITE profile | PS51032 | 23.578 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 114 | 172 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 114 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 114 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-30 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDLDSVFSFP IKYTEHLNHV KLTSMPDIRP RVVRISVTDG DATDSSSDDE SEMFGRHRVK 60 KFVNEISIEP SCSGEGNRIW GLNRSARTGL RRSTGKCGVP SRNRRSTKVS TGKKFRGVRQ 120 RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIQ LRGPDALTNF TTQQTKSFTE 180 KCSGYNSGEE SNNNICSPTS VLRCPSPPIE EAQSQIPSEP DNSCVSENFS SEFSDFSSCS 240 DTFIPDDIFA FETSIPTLFD EMGLQNQTNF FSNDSFFNGV FHSPVEEIGF RFEHPTSPSD 300 DFFQDFSDVF GSDPLVAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 110 | 170 | 1 | 62 | ATERF1 |
3gcc_A | 4e-21 | 110 | 170 | 1 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437369.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A1S3AUG2 | 0.0 | A0A1S3AUG2_CUCME; ethylene-responsive transcription factor CRF2-like | ||||
STRING | XP_008437369.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 2e-43 | cytokinin response factor 3 |