PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005610P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 260aa    MW: 29618.5 Da    PI: 7.4655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005610P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1181133155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +h  +Er+RR+++ s +++Lr+llP       ++K s  +   ++v+YI+++q
  MELO3C005610P1  81 KKIMHRDVERQRRQEMSSLYSTLRSLLPIeY---LKGKRSICDHMHETVKYIRYMQ 133
                     5789*************************77...9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1379148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-1079137No hitNo description
PROSITE profilePS5088813.14180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-882133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-982151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-486138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDLNNVESPF SFDLGDELLP LPSLSCIDNC FVPQFPSILE NNNNNSITVS PRPKNGRRKK  60
PPANTSDDKD DENNSNEHKK KKIMHRDVER QRRQEMSSLY STLRSLLPIE YLKGKRSICD  120
HMHETVKYIR YMQSKIQELC DKRDELKKLQ SNNQNPDMVE TETLKSTKRD KVVVRARDGS  180
GGIQVILDTA TRHRLPLSNI LVALTDQGLE ILSCSSNKLN DRFLHTIESQ PVFTSTNSPI  240
IDVSGLQYTL TNLEYCPLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437182.10.0PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1S3ATY10.0A0A1S3ATY1_CUCME; transcription factor bHLH36-like
STRINGXP_008437182.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.16e-33bHLH family protein