PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005335P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 352aa    MW: 39015.9 Da    PI: 8.3926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005335P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.6e-15263288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd C+FaHg
  MELO3C005335P1 263 FKTELCNKWQETGSCPYGDHCQFAHG 288
                     79***********************8 PP
2zf-CCCH18.34e-06301325125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  MELO3C005335P1 301 YKTEVCRMVLA-GvVCPYGHRCHFRH 325
                     9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-19257295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-11259294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.493262290IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-9262289IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-12263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-8296330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-11296327IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803300328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHKSTTSASN TIAAATTMSS SSQLKSQLQT NDVYASLYNS PIFAPKQPVP VSLPLTLYGD  60
STHADSSISG SKSINNHFYQ TRVVQDHQEM VNRHSLCLTQ LREATEEADA LRQENIHLRS  120
INHELSKHLS LLIQASVQKQ YGSSDQAPPF NFVEGFRGLS LAEKGASSSA WEDISDESPT  180
SVMEGGRVEG VEVERFSLPK SISVRSNGYL KMAQTGTSQG GKIRASSRPR TASPVKVTQK  240
VYVQGVKEEE KPLELEVYNQ GMFKTELCNK WQETGSCPYG DHCQFAHGIE ELRPVIRHPR  300
YKTEVCRMVL AGVVCPYGHR CHFRHALTDQ ERLMGTLKPT CRTSTTPKLD R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21263325466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467171.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1
SwissprotQ9C9F58e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1S3CSW30.0A0A1S3CSW3_CUCME; zinc finger CCCH domain-containing protein 15-like isoform X1
STRINGXP_008467171.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-82C3H family protein