PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004493P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 139aa MW: 15471.4 Da PI: 8.4997 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 126.8 | 3e-39 | 6 | 134 | 4 | 136 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++ + s + + + + +l s +k++++++ ++ MELO3C004493P1 6 SSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS-QASNHSHSGSGGDHYRVELGSSSSKSNTKMKMRAP 99 5789***********************************************99999986.33333333333333333333333333333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikee 136 +n +++ + ++rPPekrqrvPsayn+fik e MELO3C004493P1 100 I---KNPTNDHHDQRLINRPPEKRQRVPSAYNQFIKYE 134 2...33333333344689******************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.4E-43 | 8 | 134 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MSSCISSAQE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WQNSQASNHS HSGSGGDHYR VELGSSSSKS NTKMKMRAPI KNPTNDHHDQ RLINRPPEKR 120 QRVPSAYNQF IKYEENIH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-80 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-80 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457474.1 | 2e-95 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 4e-50 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3C5K6 | 4e-94 | A0A1S3C5K6_CUCME; axial regulator YABBY 5 | ||||
STRING | XP_008457474.1 | 7e-95 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-45 | YABBY family protein |
Publications ? help Back to Top | |||
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