PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004429P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 300aa    MW: 32394.3 Da    PI: 7.1882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004429P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12232277555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  MELO3C004429P1 232 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 277
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-13225281No hitNo description
SuperFamilySSF474592.36E-16225283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15229281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRLTNSLPDL HTHRRNPPPD TGASQLHHHH HHHPLQTSLF HPNSSFSSDD FLEQILSTLP  60
PPWELPPGLP PQPLPPSNTD NVEFQVGDTT PAAKMAMSLL QQQLLMSRGI DPASTGDDSG  120
LLQMPSNSVV EVDGSSSSSF KCPNPTDHGS VVVPSLFNEF AGFLNSSGSG SQNHNQSQGN  180
SNSQKQNFGA PISANTPPPT GASSCGGAAA APAPGQPRQR VRARRGQATD PHSIAERLRR  240
ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVKVLSNFLC LIIYFCLSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456521.10.0PREDICTED: transcription factor bHLH66-like
TrEMBLA0A1S3C4490.0A0A1S3C449_CUCME; transcription factor bHLH66-like
STRINGXP_008456521.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-12LJRHL1-like 1