PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003938P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 395aa    MW: 43583.9 Da    PI: 9.6185
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003938P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.2e-24134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  MELO3C003938P1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 225
                     99*****************************9445444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  MELO3C003938P1 226 QQLLLGIRRA 235
                     889****997 PP
2Auxin_resp121.66e-40260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+
  MELO3C003938P1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 343
                     79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-43123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41125249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-20133225No hitNo description
PfamPF023626.1E-22134235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083134236IPR003340B3 DNA binding domain
SMARTSM010195.7E-22134236IPR003340B3 DNA binding domain
PfamPF065073.0E-35260343IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKTPANGAAG AAAAPNSNEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV  60
AASLRKDVDG QVPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLLPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PALDFSMQPP AQELVAKDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSI  360
WEIEPVIAPF FICPPPFLRS KRPRQPGMPG TILT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1761836442388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126720.0AB112672.1 Cucumis sativus CsARF2 mRNA for auxin response factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450783.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1S3BQP60.0A0A1S3BQP6_CUCME; Auxin response factor
STRINGXP_008450783.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19