PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003781P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 308aa MW: 34469 Da PI: 7.9349

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003781P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	203.7	5.2e-63	104	244	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq +++ + + +s+++ +k +r + q +l+ ++ + MELO3C003781P1 104 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQLRAD-QSSDQTVPKIHRAN----QPSLT----PTIT-- 187 5789********************************************99988754433.22333333333332....22222....2222.. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + le ++ e +s+avfrcv+vs++d+ ee+laYqtav+igGh+fkGiLydqG+e+ MELO3C003781P1 188 SGLELGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEN 244 3477889**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-59	106	243	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	108	150	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.8E-24	195	242	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MTELFYLDRK QEDDPENQRT RSEQQLFLYN GRSNNPQQIY SKEFQIWPQY YSHNHHLPNQ 60 NVENYISFGV GPSRRSSLMI NAFDHDFVSR SGFTMTRHSG GGGGGGMNCQ DCGNQAKKDC 120 SHLRCRTCCK SRGFHCQTHV KSTWVPAAKR RERQQQRHQQ LRADQSSDQT VPKIHRANQP 180 SLTPTITSGL ELGNFQGEFN SSAVFRCVKV SAIDNVEEQL AYQTAVNIGG HMFKGILYDQ 240 GPENNQINLS SGGDGENDGQ GLDLVIGASN CSGRVNNQST PFVESSLYPI PINSFNNCTQ 300 FFPSSRT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466512.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 3
Swissprot	K4B6C9	3e-65	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3CRF2	0.0	A0A1S3CRF2_CUCME; protein SHI RELATED SEQUENCE 3
STRING	XP_008466512.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-58	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]