PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003768P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 949aa MW: 104348 Da PI: 5.4268 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ + ++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F +++ MELO3C003768P2 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239 99*********************999*****954.4444.38************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++v+r+ MELO3C003768P2 240 KSQLLIGVRRA 250 7778****997 PP | |||||||
2 | Auxin_resp | 113.5 | 2e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ MELO3C003768P2 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358 79*********************************99*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.01E-46 | 136 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-42 | 142 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-22 | 148 | 249 | No hit | No description |
Pfam | PF02362 | 1.1E-21 | 149 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 149 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-32 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.883 | 834 | 918 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.1E-9 | 835 | 921 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-8 | 836 | 913 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MGSVEEKLKT SGGLINNTPQ TNLLDEMKLL KEMQDQSGAR KAINSELWHA CAGPLVSLPH 60 VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQNVTLHAD KDSDEIYAQM 120 SLQPVNSEKD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY 180 TMQPPTQELI VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK 240 SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI 300 PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE 360 WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWGS LVKRPMLRVP 420 ENIRGDLSYA PTLCSEPLMK MLLRPQLVNL NGTTLQQDSA NNLVKIQDMK DMQNPKMQQL 480 IPTETASPGN QNQHHPGPAQ SDPISPNSSP KANVPGKMHT SVAIGSEAPT AADGDKAKYD 540 RDLSASTHQS NPLPPVGGCA EEKLTGNEVN MQTLVNQLSF VNQNQIPMEL QSVSWPMQPQ 600 LESLIQHPQP IDMPQPEYTN SNGLISSLDG DGCLINPSCL PLPGVMRSPG NLSMLGLQDS 660 STVFPEVLNF PLPSTGQDMW DPLNNMRFSS QTNHLVSFSH ADASNLNCMA NANITRDVSD 720 ESNNQSGIYS CSNLEMSNGG STLVDHAVSS TILEDYCTLK DADFPHPSDC LAGNFSSSQD 780 VQSQITSASL GDSQAFSRQE FHDNSAGTSS CNVDFDEGSL LQNGSWKQVV PPLRTYTKVQ 840 KAGSVGRSID VTSFKNYDEL CSAIECMFGL EGLLNDPRGS GWKLVYVDYE KDVLLIGDDP 900 WEEFVSCVRC IRILSPSEVQ QMSEEGMKLL NSAMMQGINC PMSEGGRA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 383 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323419 | 0.0 | KU323419.1 UNVERIFIED: Trichosanthes dioica clone TdARF_27 auxin response factor 5-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466503.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S3CRF4 | 0.0 | A0A1S3CRF4_CUCME; Auxin response factor | ||||
STRING | XP_008466501.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |