PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003768P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 851aa MW: 93673.6 Da PI: 5.1776 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 51 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ + ++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F +++ MELO3C003768P1 51 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 141 99*********************999*****954.4444.38************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++v+r+ MELO3C003768P1 142 KSQLLIGVRRA 152 7778****997 PP | |||||||
2 | Auxin_resp | 113.7 | 1.7e-37 | 177 | 260 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ MELO3C003768P1 177 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 260 79*********************************99*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-47 | 38 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-42 | 44 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-22 | 50 | 151 | No hit | No description |
Pfam | PF02362 | 9.4E-22 | 51 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-24 | 51 | 153 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 51 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 177 | 260 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.883 | 736 | 820 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.8E-9 | 737 | 823 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.16E-9 | 738 | 815 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MCQVQNVTLH ADKDSDEIYA QMSLQPVNSE KDVFLVPDFG LRPSKHPNEF FCKTLTASDT 60 STHGGFSVPR RAAEKLFPPL DYTMQPPTQE LIVRDLHDNT WTFRHIYRGQ PKRHLLTTGW 120 SLFVGAKRLR AGDSVLFIRD EKSQLLIGVR RANRQQTTLP SSVLSADSMH IGVLAAAAHA 180 AANRSPFTIF YNPRACPSEF VIPLAKYRKC VYGTQLSAGM RFGMMFETEE SGKRRYMGTI 240 VGISDLDPLR WPGSKWRNLQ VEWDEPGCCD KQNRVSSWEI ETPESLFIFP SLTSGLKRPL 300 HGGFLGETDW GSLVKRPMLR VPENIRGDLS YAPTLCSEPL MKMLLRPQLV NLNGTTLQQD 360 SANNLVKIQD MKDMQNPKMQ QLIPTETASP GNQNQHHPGP AQSDPISPNS SPKANVPGKM 420 HTSVAIGSEA PTAADGDKAK YDRDLSASTH QSNPLPPVGG CAEEKLTGNE VNMQTLVNQL 480 SFVNQNQIPM ELQSVSWPMQ PQLESLIQHP QPIDMPQPEY TNSNGLISSL DGDGCLINPS 540 CLPLPGVMRS PGNLSMLGLQ DSSTVFPEVL NFPLPSTGQD MWDPLNNMRF SSQTNHLVSF 600 SHADASNLNC MANANITRDV SDESNNQSGI YSCSNLEMSN GGSTLVDHAV SSTILEDYCT 660 LKDADFPHPS DCLAGNFSSS QDVQSQITSA SLGDSQAFSR QEFHDNSAGT SSCNVDFDEG 720 SLLQNGSWKQ VVPPLRTYTK VQKAGSVGRS IDVTSFKNYD ELCSAIECMF GLEGLLNDPR 780 GSGWKLVYVD YEKDVLLIGD DPWEEFVSCV RCIRILSPSE VQQMSEEGMK LLNSAMMQGI 840 NCPMSEGGRA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 285 | 107 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323419 | 0.0 | KU323419.1 UNVERIFIED: Trichosanthes dioica clone TdARF_27 auxin response factor 5-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466503.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S3CRF4 | 0.0 | A0A1S3CRF4_CUCME; Auxin response factor | ||||
STRING | XP_008466501.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |