PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003686P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 192aa MW: 21034.8 Da PI: 10.4614

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003686P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.3	3.9e-14	79	138	1	60
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 eke+kr +r+ +NR++A+ R+RKk ++ eLee++ +Le+ N++L ++l++l++e + l+ MELO3C003686P2 79 EKESKRLKRLLRNRVSAQQARERKKVYLSELEERATNLEKRNSELEEKLSTLQNENQMLR 138 89*****************************************************99764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	9.6E-5	78	94	IPR001630	cAMP response element binding (CREB) protein
Pfam	PF00170	5.0E-12	79	138	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.6E-11	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.07	81	138	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-15	83	140	No hit	No description
SuperFamily	SSF57959	4.94E-12	83	139	No hit	No description
CDD	cd14704	8.17E-20	84	135	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	9.6E-5	96	116	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	9.6E-5	116	133	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MQGRAAAAAI SRMRSSSERS SSSAFQLDVK EDIGAESDEE EISRVPQICG NSGSTVGISA 60 PGKAPASDSV RSRGRSAAEK ESKRLKRLLR NRVSAQQARE RKKVYLSELE ERATNLEKRN 120 SELEEKLSTL QNENQMLRHV RQTKPSPLAL FVNIFVHDGS NIDPKASTSS ILVLMPLASI 180 VVNIYVLNLR T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	1e-178	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	1e-178	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466392.1	5e-94	PREDICTED: transcription factor HY5
Swissprot	Q9SM50	4e-38	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A1S3CSG2	1e-92	A0A1S3CSG2_CUCME; transcription factor HY5
STRING	XP_008466392.1	2e-93	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7064	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	2e-39	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]