PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C003622P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 37710.7 Da PI: 10.1356 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 272 | 329 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ MELO3C003622P1 272 DEYSWRKYGQKPIKGSPYPRGYYKCSTMrGCPARKHVERDPNDPAMLIVTYEGEHRHT 329 9************************9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.4E-19 | 217 | 268 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-32 | 258 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.262 | 265 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-26 | 268 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 270 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 272 | 328 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAVDLMSFPK MDDQIAIQEA ASQGLKSMEH LIRLLSHKQS SSHVDCSDLT DATVSKFKKV 60 ISLLNRTGHA RFRRGPISST SSSSSGSSAH LSQNQAMTLT PTPFTSPPNV PAPPFTAPAT 120 IAQPQTKVVA AAANFLPQPQ SMTLDFTRPN ILNSNPKGTD LEFSKETFSV SSSSSFMSSA 180 ITGDGSVSNG KLGTSIFLAP APTASGGKPP LSVAPYKKRC HEHDHSEDLS GKFSGSTSIS 240 GKCHCSKRRK NRMKKTIRVP AISSKIADIP PDEYSWRKYG QKPIKGSPYP RGYYKCSTMR 300 GCPARKHVER DPNDPAMLIV TYEGEHRHTQ SSLPENMAAA AGVALVFEST * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 258 | 328 | 2 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984024 | 0.0 | GU984024.1 Cucumis sativus WRKY protein (WRKY25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466300.1 | 0.0 | PREDICTED: probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-151 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A1S3CQX7 | 0.0 | A0A1S3CQX7_CUCME; probable WRKY transcription factor 11 | ||||
STRING | XP_008466300.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-135 | WRKY DNA-binding protein 11 |