PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003521P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 505aa    MW: 54367 Da    PI: 9.3318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003521P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08203248145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++W++ Ed+ l+ av++ G g+W+ I +      Rt+ q+  rw 
   MELO3C003521P1 203 RKPWSKAEDLELIAAVEKCGEGNWANILKGDFkGDRTASQLSQRWS 248
                      789************************9842235999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.667198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-13199252IPR009057Homeodomain-like
SuperFamilySSF466899.33E-12200253IPR009057Homeodomain-like
SMARTSM007173.3E-9202253IPR001005SANT/Myb domain
PfamPF002494.3E-7203247IPR001005SANT/Myb domain
CDDcd116603.05E-14204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MIGKKENRRT GTISMEDCST LLGRYSVRTI FTLLREVAQV SGVRIDWDKL VKNTSTGISD  60
AREYQLLWRH LAYRHTLLED MHSVTDSLDY DSDLDFEVEP FPSVGSESSN EAAACVKVLI  120
ANGIPNESDV PNSSAVEAPL TIRISNSQPP TDNFDNHQSA SLQGISVTIP LSIQRQPIPV  180
PPAAEVFDVN GAAGASAASR KRRKPWSKAE DLELIAAVEK CGEGNWANIL KGDFKGDRTA  240
SQLSQRWSVI RKRRCNLNLG ASTSSTTQKA QIDAAHRALN FALDLPVNNT KTANSNINSS  300
IVSSSASASE SSVQMQNQSP QISMPSRPLL VDPLPSAVKS GINTSKNSLM INSTHNSDSI  360
VRATAVAAGA RIVSPSDAAS LMKATQTKNA IHIKSKCTPM HLDARPNVHY ISTGKTPTPS  420
SNYVSGKSTM VGNNSMKAVS PKILHHRSAA ISTNTPSNQV SPTTESPLKQ EVNSSEERKT  480
PEAIITAKEE FRENSTGNDV KIRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466161.10.0PREDICTED: uncharacterized protein LOC103503656 isoform X2
TrEMBLA0A1S3CRZ40.0A0A1S3CRZ4_CUCME; uncharacterized protein LOC103503656 isoform X2
STRINGXP_008466159.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-66MYB_related family protein