PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003466P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 353aa    MW: 39146.9 Da    PI: 5.6747
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003466P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17248282135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  MELO3C003466P1 248 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 282
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-8422338IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-18242292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14242279IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.558242278IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15243306No hitNo description
CDDcd002028.59E-15247294No hitNo description
PfamPF003201.3E-15248282IPR000679Zinc finger, GATA-type
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGPEYFQPG FSSQFSTEDR QSSDANKTTA AAVPPTTADH FIVEDLLDFS NDDDVVFTDG  60
AFDNQTPTST DSSSLTLLDS CNSYPNTGNA HNYHFADANF STDLGVPYDD LAELEWLSNF  120
VEDSFSTDDL EKLSLISGMN SQTDVHDDDA SKTREFQSGF NPRNHSPAFR HEMSVVPAKA  180
ARSKRSRAAP CIWNSRLSVL SPTNSSSETD VVVTLTPHPN TAKKTTKKKE IPDDTSSAAG  240
NNGEGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS  300
NSHRKVMELR RQKEMMRAQQ QQQYLHHESM GFDHVSNDDD YLIHQHIGPL YQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466068.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826322e-83GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S3CQD20.0A0A1S3CQD2_CUCME; GATA transcription factor
STRINGXP_008466068.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-73GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]