PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003463P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 233aa    MW: 25636 Da    PI: 6.081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003463P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183383155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  MELO3C003463P1 33 SIYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 83
                    57*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.98E-323393No hitNo description
PfamPF008479.9E-133383IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-313492IPR001471AP2/ERF domain
PROSITE profilePS5103223.3413491IPR001471AP2/ERF domain
SMARTSM003805.1E-373497IPR001471AP2/ERF domain
PRINTSPR003673.1E-103546IPR001471AP2/ERF domain
PRINTSPR003673.1E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSPTNQQSQI TRSNDDNNSS SSSSSKRVRA SDSIYRGVRM RAWGKWVSEI REPRKKSRIW  60
LGTFPTPEMA ARAHDVAALS IKGNSAILNF PELAHSLPRP VSLAPRDIQA AAAKAAHXXX  120
XXXXXSNPSS SSSSSSSSSL SVSTSLSPSS PSSSTQPDDD DHELTEIVKL PTLASSNYDD  180
HEFVLMDSTE GWVYPPPWLR TIEDYYYGYH TNNINDELGI GDHNHSNLSW DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-182391372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466061.11e-160PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3CQC61e-159A0A1S3CQC6_CUCME; dehydration-responsive element-binding protein 3-like
STRINGXP_008466061.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]