PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002675P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 284aa MW: 30999.2 Da PI: 5.4004

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002675P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.6	1.5e-29	76	134	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp++++itY+ eHnh+ MELO3C002675P1 76 SDSWAWRKYGQKPIKGSPYPRAYYRCSSSkGCPARKQVERNRLDPTTLVITYSCEHNHS 134 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-30	69	135	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-25	72	135	IPR003657	WRKY domain
SMART	SM00774	1.4E-33	75	135	IPR003657	WRKY domain
PROSITE profile	PS50811	31.272	76	136	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	77	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDDVSFNHNN HHQFYSSDPF EDSDELKPTP DSPAPSSTIA AAATKKGRRG MKKKIISVKI 60 NGDSPRNSSG SATPPSDSWA WRKYGQKPIK GSPYPRAYYR CSSSKGCPAR KQVERNRLDP 120 TTLVITYSCE HNHSGPVSRN NNNNNNQNNQ IVLMKPGSPE TVAVHQEPEV EEKFVEIGGE 180 ESLITADEFS WFGEMETTSS TVLESSIFSG RASTGLVDHS ISSDVAMLFP MGDDDVDESL 240 FADLGELPEC SLVFRRGGGR GLPVDEQPAA AQRRITPWCG TTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-17	76	136	15	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984011	0.0	GU984011.1 Cucumis sativus WRKY protein (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443489.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	2e-67	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A1S3B8W7	0.0	A0A1S3B8W7_CUCME; probable WRKY transcription factor 65 isoform X1
STRING	XP_008443489.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-63	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]