PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002608P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 197aa    MW: 23329.2 Da    PI: 10.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002608P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-111864855
                    HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +Er+RR++++s f++L +llP+     +    +  + Le A++YIk+Lq
  MELO3C002608P2 18 VERNRRKEMKSLFSTLNSLLPNhT--SREAPRTVPDQLEDATNYIKELQ 64
                    8*********************55..57777999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2491063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-121583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-121681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-51669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-51868No hitNo description
PfamPF000108.2E-81864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSNPIRCQPT PQSDRKFVER NRRKEMKSLF STLNSLLPNH TSREAPRTVP DQLEDATNYI  60
KELQKNIQKL KEKKEELMGK NKMEEDEEAE GRRRRRFEHE TKPKLLLQVK AHQIGSSVEV  120
FLTTGSDYHF ILQQVLRLLQ DNGAEILNVN QSMFTDRVFH KITAQKKKMM MMMMLMLMIM  180
ILKNLGGWRR NRARRW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442634.21e-119PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3B6601e-117A0A1S3B660_CUCME; transcription factor bHLH118-like
STRINGXP_008442634.11e-118(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-21bHLH family protein