PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002608P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 214aa    MW: 24393.4 Da    PI: 8.0792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002608P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-111864855
                    HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +Er+RR++++s f++L +llP+     +    +  + Le A++YIk+Lq
  MELO3C002608P1 18 VERNRRKEMKSLFSTLNSLLPNhT--SREAPRTVPDQLEDATNYIKELQ 64
                    8*********************55..57777999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2491063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-121583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-121681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-51669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-61868No hitNo description
PfamPF000109.6E-81864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSNPIRCQPT PQSDRKFVER NRRKEMKSLF STLNSLLPNH TSREAPRTVP DQLEDATNYI  60
KELQKNIQKL KEKKEELMGK NKMEEDEEAE GRRRRRFEHE TKPKLLLQVK AHQIGSSVEV  120
FLTTGSDYHF ILQQVLRLLQ DNGAEILNVN QSMFTDRVFH KITAQVDGEG IGPGDGERIC  180
KTVKKFVSQY KDEQCSVDYN GNGNGNGNGG EDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442634.21e-158PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3B6601e-157A0A1S3B660_CUCME; transcription factor bHLH118-like
STRINGXP_008442634.11e-157(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2140934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-22bHLH family protein