PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002600P4

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LSD

Protein Properties

Length: 147aa MW: 16050.5 Da PI: 6.4842

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002600P4	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	30.9	4.6e-10	43	67	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA++V+C+ C tV MELO3C002600P4 43 CGTCRRLLKYLKGARYVQCSWCSTV 67 ***********************99 PP
2	zf-LSD1	41.7	1.9e-13	81	105	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V MELO3C002600P4 81 CGSCAVLLMYPYGASSVRCSSCTSV 105 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.0E-14	40	70	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.9E-8	43	67	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.0E-12	78	107	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.3E-11	81	105	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPQ PQLSPADMAQ MVCGTCRRLL KYLKGARYVQ 60 CSWCSTVNFV LEAHEVGQVK CGSCAVLLMY PYGASSVRCS SCTSVTEIGI RHGCVETNPS 120 HHSMCRQGPW SRSHFSTVVL FDGIIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-56	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-56	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442518.1	1e-106	PREDICTED: protein LOL2 isoform X1
Swissprot	O65426	4e-34	LOL2_ARATH; Protein LOL2
TrEMBL	A0A1S3B5V8	1e-104	A0A1S3B5V8_CUCME; protein LOL2 isoform X1
STRING	XP_008442518.1	1e-105	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-26	lsd one like 2