PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002600P4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LSD
Protein Properties Length: 147aa    MW: 16050.5 Da    PI: 6.4842
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002600P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.94.6e-104367125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Cr lL Y  GA++V+C+ C tV
  MELO3C002600P4 43 CGTCRRLLKYLKGARYVQCSWCSTV 67
                    ***********************99 PP

2zf-LSD141.71.9e-1381105125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+sVRC++C  V
  MELO3C002600P4  81 CGSCAVLLMYPYGASSVRCSSCTSV 105
                     **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.0E-144070IPR005735Zinc finger, LSD1-type
PfamPF069435.9E-84367IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-1278107IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-1181105IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPQ PQLSPADMAQ MVCGTCRRLL KYLKGARYVQ  60
CSWCSTVNFV LEAHEVGQVK CGSCAVLLMY PYGASSVRCS SCTSVTEIGI RHGCVETNPS  120
HHSMCRQGPW SRSHFSTVVL FDGIIL*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-56LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-56LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442518.11e-106PREDICTED: protein LOL2 isoform X1
SwissprotO654264e-34LOL2_ARATH; Protein LOL2
TrEMBLA0A1S3B5V81e-104A0A1S3B5V8_CUCME; protein LOL2 isoform X1
STRINGXP_008442518.11e-105(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-26lsd one like 2