PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002383P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 369aa    MW: 40885.9 Da    PI: 8.2047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002383P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09186233455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  MELO3C002383P1 186 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 233
                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-11180237No hitNo description
PROSITE profilePS5088815.993182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17182247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAAFSYQYQP FLLDSIFLHN NPLKVGGFFD EQNFNTNCFS QFYPQDQPQQ QQQQQQQQPI  60
YHFPDLSKQS PESSALVDRS DVSAELPVGH RLKPAVTVTV TSPCSKKRKS RNNSSASSAQ  120
SKGTTDHQSN GKKPKNKGEL DEGKEKDQKA KNGKKLLEEK IKDSEDGGAT TGYIHVRARR  180
GQATDSHSLA ERVRREKISE RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS  240
MKLASLNPIF FDFRMDLDGL MIQPETTSLS SITPTLPAMA QCSVVPPQAL IDTTPPATPS  300
PAISTGNNFP LMDPSANLFL LQQGISPNNG YSQSSQDNVK VSSWDVEDQK RKQLLISSGI  360
GDNLCYFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440060.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A1S3B0V00.0A0A1S3B0V0_CUCME; transcription factor bHLH137
STRINGXP_008440060.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-55bHLH family protein