PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002331P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 570aa    MW: 64430.9 Da    PI: 5.8498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002331P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-1531119197
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+   d++++  l++p  fa++   ++   +k ++led+ g++W+v++  + + g+  +++GW+ F +++gL++gDf++F ++   + +++v
  MELO3C002331P2  31 FFKVM-FGDHFSE-VLYFPPIFAATVsRLV---NKNVVLEDSLGEQWNVTI--SDCEGSLAFQEGWNAFSSEHGLETGDFLIFNHIM--DLHFNV 116
                     56666.3344444.599******9996555...457***************..*******************************775..454577 PP

                     EEE CS
              B3  95 kvf 97 
                     +++
  MELO3C002331P2 117 SIY 119
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-1927124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-1929124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.39329122IPR003340B3 DNA binding domain
CDDcd100175.36E-1530119No hitNo description
PfamPF023625.3E-1331119IPR003340B3 DNA binding domain
SMARTSM010193.9E-631122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-14465566IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.25474568IPR003340B3 DNA binding domain
CDDcd100176.52E-7479566No hitNo description
SuperFamilySSF1019365.3E-11482565IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-7498564IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08506568IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSRKVKACTE CTQRCLHIHR KTGNLSSVTS FFKVMFGDHF SEVLYFPPIF AATVSRLVNK  60
NVVLEDSLGE QWNVTISDCE GSLAFQEGWN AFSSEHGLET GDFLIFNHIM DLHFNVSIYT  120
KTGCEKIEFP KKGNMRKRAS TGPLFETINE GLTNPQVSYP SVGSESNMAL SQDKCLMAGS  180
QNMNVNWNKR PKYRRNDEGR GPLCKTDVID DSYCFINQNK DVGLEENRSP LLDLFLMEMQ  240
MVNPSTKENT TKNVGEDELD PNCTSTSATA ANDAIIVTLA NDAPIDIKGE REALPLDTCA  300
NKMIDKIQCF EKANIKMSVS DNNPCHDKTI EVPFISAAKN SDRDVERFYE TPLKMVKACQ  360
NVPAICNTPS TITRHDLGSN EKRSSSTEHC RSVKQEYAPN SSEVRKWDVA NIIKKEPLEI  420
KTEVNNFGDS IKQILEPKVI KEEYTEMSNQ SGRDNNDDTN YEDPIETPAH ISCIVAKDTL  480
SFLELPTSLH LSCSRGRRNP EKKRIVLLRD PRKRLWPILY HEMPNVKVLT SGWEAFRSGN  540
EIQSGDECLF RIEDEVERIF EVSIRKCKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502513KRIVLLRDPRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439306.10.0PREDICTED: uncharacterized protein LOC103484129
RefseqXP_008439313.10.0PREDICTED: uncharacterized protein LOC103484129
TrEMBLA0A1S3AZ520.0A0A1S3AZ52_CUCME; uncharacterized protein LOC103484129
STRINGXP_008439306.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-13B3 family protein