PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C002202P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 616aa MW: 66691.5 Da PI: 7.0361 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.8e-30 | 273 | 332 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+ MELO3C002202P1 273 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCADDMSILITTYEGNHNHP 332 58**************************888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 259 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-27 | 266 | 334 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.656 | 268 | 334 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 273 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 274 | 332 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MEAAAAFGRP RPVVKTEKPP VRDVSHDDDR DSPSKQQQQQ QHLLVKRAGN NHAKQEHDTE 60 DKTSCSSDKK DLSCIKLQED QLESARAEMG EVREENQRLK QSLNQIMKDY EALKMQFLGI 120 VGRDSKKLQD DDNDVNKEQQ QQQQHDDDQI ELVSLSLGRF PVSEKIKKVA DEKSSMNIII 180 GGGDQDEEAA CKEALSLGLN CKFEREESMV AVVKEVDSPN SFDHEATKEE AGETNWPSKG 240 GKTMRSVEDD VTPQNPPKRA RVCVRARCET ATMNDGCQWR KYGQKIAKGN PCPRAYYRCT 300 GSPTCPVRKQ VQRCADDMSI LITTYEGNHN HPLPASANAM ASTTSAAASM LLSGSTTSAT 360 TAASSSTASN TLHGLNFYAN NSKPNFYLPN NSSSIISSTS PTHPTITLDL TSNPSSSSSN 420 SSTHFGKFTS NFPNSRYPFT GQLDFGSSRN NVLSWNNGLL SYNRNNHPTT TTTANNIYQN 480 YIQQQQRNPT TSLQHQQPPL PDTIAAATKA ITADPSFQSA LAAALTSIIG TGGASASAGL 540 TKSSSGRGEQ SLFQLMTTTA TTNKGNGCGT SFLNNITTTT TTTTSNSPPT GNMVFVPTNS 600 KSASASPGDH IDLTH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 260 | 334 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437539.1 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-114 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A1S3ATY0 | 0.0 | A0A1S3ATY0_CUCME; probable WRKY transcription factor 61 | ||||
STRING | XP_008437539.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 7e-56 | WRKY DNA-binding protein 61 |
Publications ? help Back to Top | |||
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