PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C000087P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 135aa MW: 15438.5 Da PI: 11.0551 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 139.8 | 3.1e-43 | 28 | 121 | 73 | 170 |
YABBY 73 eelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 e++ + ++n+ n+ t+++ + s+ ++++pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ih MELO3C000087P1 28 ENMATPNSNYLINQF----GATTNNFGMPSRGVTDDLPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIH 118 333333333333322....22222222337888999***999***************************************************** PP YABBY 168 fgl 170 fgl MELO3C000087P1 119 FGL 121 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-39 | 51 | 121 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.06E-8 | 65 | 114 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 69 | 115 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MRGLLLPSPN QFHQLGHSFF SPSHNILENM ATPNSNYLIN QFGATTNNFG MPSRGVTDDL 60 PRPPVINRPP EKRQRVPSAY NRFIKDEIQR IKSVNPDISH REAFSAAAKN WAHFPHIHFG 120 LMPDQTVKKT NIRQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN683796 | 4e-62 | LN683796.1 Cucumis melo genomic scaffold, unassembled_sequence31283. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147586.1 | 2e-97 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | O22152 | 9e-43 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0A0KKT0 | 4e-96 | A0A0A0KKT0_CUCSA; Axial regulator YABBY1 | ||||
STRING | XP_004147586.1 | 7e-97 | (Cucumis sativus) | ||||
STRING | XP_004167326.1 | 7e-97 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-45 | YABBY family protein |