PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023471
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 411aa    MW: 46592.5 Da    PI: 6.3443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023471genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.6e-53211481128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyf+s rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l
  Cla023471  21 LPPGFRFHPTDEELITFYLASKVFKGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsNGSL 119
                79*************************777.45***************8888899**************************************9978899 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 g+kktLvfykgrap+gekt+Wvmheyrl
  Cla023471 120 LGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6316171IPR003441NAC domain
PROSITE profilePS5100559.24321170IPR003441NAC domain
PfamPF023651.6E-2622148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLAMEQILSE LNGEELNEQG LPPGFRFHPT DEELITFYLA SKVFKGSFCG VEIAEVDLNR  60
CEPWELPDVA KMGEREWYFY SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASNGSLL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHACKE EWVICRIFHK NGEKKNPLFQ  180
CQTYLLESAL SSSTTSNSLP PLLESTPTTT LVECQSQAAM QAFQNPFQIQ QPHENDLKRF  240
MSSVVSQSNL LSSSEQPHKS PISINPIDNA NNNMLLYTSS PSILFKSLLS HQDSTVVLKQ  300
QQQQCDHVFK QFNKAAEASF TAHNFEPGEA EANSNFMDIK KMMQPNAPPS SYHQHPLFFE  360
MECNSPTAVA ADVSLHDIST SIAFNRPAYQ TMLDPHINIL HAHGESWPLD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-511417013168NAC domain-containing protein 19
3swm_B6e-511417013168NAC domain-containing protein 19
3swm_C6e-511417013168NAC domain-containing protein 19
3swm_D6e-511417013168NAC domain-containing protein 19
3swp_A6e-511417013168NAC domain-containing protein 19
3swp_B6e-511417013168NAC domain-containing protein 19
3swp_C6e-511417013168NAC domain-containing protein 19
3swp_D6e-511417013168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-120LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-120LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654285.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_011654286.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0A0L1E70.0A0A0A0L1E7_CUCSA; Uncharacterized protein
STRINGXP_004157114.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-98NAC family protein