PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023348
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 300aa    MW: 33197 Da    PI: 6.4246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023348genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11166211550
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Cla023348 166 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 211
                8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-14162226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703164216IPR004827Basic-leucine zipper domain
PfamPF001706.4E-10166210IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-12166217No hitNo description
SuperFamilySSF579591.05E-11166220No hitNo description
CDDcd147035.79E-24167217No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPNLTPSPPP PPPPSATHHH NSSWVDDFLD FSTARRGLHR RSISDSIAFL ETPFSDQCRN  60
SALLHPPPPF DRLDDDQLMS MFTDDISIPI PASPSNPSTP SDQNSNNDDK NPTEDAMFPP  120
PPPPPLPPHQ LKNEPGEVEI SSSCQLQQQS QPPPPSSAAD NTIDPKRVKR ILANRQSAQR  180
SRVRKLQYIS ELERSVTTLQ TEVSALSPRV AFLDHQRLIL NVDNSALKQR IAALAQDKIF  240
KDAHQEALKK EIERLRQVYH QQSLKKMSGN QNGAAQPQEP PSGEGTPPQA AEMEKGQAVS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818628e-53LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081.
GenBankLN7132618e-53LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022935721.11e-145basic leucine zipper 34-like
SwissprotQ9M2K42e-92BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A0A0L3C01e-143A0A0A0L3C0_CUCSA; Uncharacterized protein
STRINGXP_004146037.11e-145(Cucumis sativus)
STRINGXP_004163639.11e-145(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-64bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]