PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla023239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 20493.4 Da PI: 9.6472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2e-50 | 21 | 159 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...... 95 pGfrFhPtdeelv +yL++kve+k++ + e+ik++diyk++PwdLpk + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s+ Cla023239 21 LPGFRFHPTDEELVGFYLRRKVEKKPIAI-EIIKQIDIYKYDPWDLPKVSNVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSSlkspny 119 69***************************.89***************888889****************************************9888887 PP NAM 96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Cla023239 120 nnnniqdSNNIIGLKKSLVYYRGTAGKGTKTDWMMHEFRL 159 76655554455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-52 | 17 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.332 | 20 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 22 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEVTSKLVDV VADQEDDQAV LPGFRFHPTD EELVGFYLRR KVEKKPIAIE IIKQIDIYKY 60 DPWDLPKVSN VGDKEWYFFC IRGRKYRNSI RPNRVTGSGF WKATGIDKPI FSSLKSPNYN 120 NNNIQDSNNI IGLKKSLVYY RGTAGKGTKT DWMMHEFRLP FHNIPHEDTV RLPSSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-46 | 13 | 159 | 8 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681865 | 4e-87 | LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599. | |||
GenBank | LN713261 | 4e-87 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466795.1 | 4e-99 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
Swissprot | Q9SK55 | 1e-77 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1S3CS33 | 1e-97 | A0A1S3CS33_CUCME; transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
STRING | XP_008466794.1 | 2e-97 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-76 | NAC domain containing protein 42 |