PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023109
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 350aa    MW: 39049.8 Da    PI: 5.8319
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023109genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.8e-18246280135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cla023109 246 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 280
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-8322336IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558240276IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18240290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14241277IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.47E-15241304No hitNo description
CDDcd002021.39E-14245292No hitNo description
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15246280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGAEYFQPG FCSQFANENR QSSDANKTTV LPPSATADHF IVEDLLDFSN DDDVVFTDGT  60
LDNQTPTSTD SSTLTLLDSC NSYPNFEQHN NAHNYNFADA NFSTDLGVPY DDLAELEWLS  120
NFVEDSFSTH DLEKLSLISG MNSRTDHDDD ASKTSEFQTG LNRNHSSSGF RPEMTVPAKA  180
ARSKRSRAAP CIWNSRLSVL SPTNSSSETD VVVTLTPHPN TAKKTAKKKE TPDDTSSAGN  240
GEGRKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVLTKHSNS  300
HRKVMELRRQ KEMMRAQQQQ QYLHHESMGF DHVSNDDDYL IHQHIGPLYQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652614.10.0PREDICTED: GATA transcription factor 9-like
SwissprotP697813e-80GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0A0LH130.0A0A0A0LH13_CUCSA; GATA transcription factor
STRINGXP_008466068.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-70GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]