PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022673
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 486aa    MW: 54642.1 Da    PI: 6.2762
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022673genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084164541854
                HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Cla022673 416 MFQNflHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVR 454
                6887779******************************88 PP
2BELL64.42.3e-21291355570
       BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                + +kk++Ll+ll+ +d+rY q+ ++++tv s+F+a+++l++ +++t+  l++i+  +r+L+++i++
  Cla022673 291 VDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDP-RLHTRYTLQTITSVYRNLRERITN 355
                679**************************************.**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.7E-16213355IPR006563POX domain
PfamPF075268.5E-23219354IPR006563POX domain
PROSITE profilePS5007111.175395458IPR001356Homeobox domain
SMARTSM003898.7E-5398462IPR001356Homeobox domain
CDDcd000861.31E-9398459No hitNo description
SuperFamilySSF466892.52E-15399467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25401464IPR009057Homeodomain-like
PfamPF059202.1E-14415454IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSTALQRIDL GDACLSSSGN VEIQNQLAGA IPITSLFQST SLAPVNAIHE NTKDSTFPDP  60
QFQQLETFRT CILHSSSNAS NSSFASSLIC EGDESLCNAS IKWENDRFHC IQQLSRENPE  120
GSDFQAISSA EHLHQNGWMP SSTMSSKLWN ELSLSLATSE AVLSGGTNFL DQYSQLAFSS  180
ATQPCLNSTE LASNLNSDSS RDLSLSYGCS SPVRLSRAIA GSRYLSVIQD VLSQIASYPL  240
EGSEQVSHST TAAGFVPFSS SSLDDATIEY GSDVTGKYSS QMEPEWQKLS VDAKKSHLLT  300
LLQLIDERYT QCLDEIHTVT SAFHAATDLD PRLHTRYTLQ TITSVYRNLR ERITNCIISM  360
GMHSNTMCTK EKEKSFEATF IQKQWALQQL KRKDNQLWRP QRGLPEKSVS VLRAWMFQNF  420
LHPYPKDTEK HLLAVKSGLT RNQVSNWFIN ARVRLWKPMI EEMYAEMSRR KFSQNEEETE  480
RIHQPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14404462563Homeobox protein Meis2
3k2a_B1e-14404462563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444475.10.0PREDICTED: homeobox protein ATH1
RefseqXP_008444476.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900072.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900073.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900074.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900075.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900076.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900077.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900078.10.0PREDICTED: homeobox protein ATH1
RefseqXP_016900079.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-101ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A1S4DVT00.0A0A1S4DVT0_CUCME; homeobox protein ATH1
STRINGXP_008444474.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-99homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]