PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022649

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 376aa MW: 41548.6 Da PI: 6.5969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022649	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	213	261	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ +L + ++Y++sLq Cla022649 213 NNHSLAERVRREKISERMKLLQDLVPGC----NQITGRTVVLDEIINYVQSLQ 261 58************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-15	208	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.22E-10	208	265	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-15	208	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.284	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-5	213	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-8	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGGSTSGFQC EIMNCSFGVS SPQRLIGADT SFSSTCGSSA TTPPCELSNS LENERVKTIS 60 HILHDPSTLS FDMFGSGNFS EMVGSFGFLN EGNHSQIPNI KCPFSYVPNL DEEETVWPKK 120 DVKACLDCVN ENQRKFVLGS NSSSPNKNAE DNLDVEATEI LNKDEKTLKV EHRMSANFYT 180 KSDSKQAKGG SQSVQAPQEN YIHVQARRGR ATNNHSLAER VRREKISERM KLLQDLVPGC 240 NQITGRTVVL DEIINYVQSL QQQVEFLSMK LANVGPESSL DTEQILLTNN SYISSSNILR 300 TRGKGVDSVL AIDPRLTTSH TIPHVMFQLH GTVPTMPKTT SQQLSSLSKV SSRSSKETIS 360 LSFYNDIIES IYVQMK

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGGSTSGFQC EIMNCSFGVS SPQRLIGADT SFSSTCGSSA TTPPCELSNS LENERVKTIS  60
HILHDPSTLS FDMFGSGNFS EMVGSFGFLN EGNHSQIPNI KCPFSYVPNL DEEETVWPKK  120
DVKACLDCVN ENQRKFVLGS NSSSPNKNAE DNLDVEATEI LNKDEKTLKV EHRMSANFYT  180
KSDSKQAKGG SQSVQAPQEN YIHVQARRGR ATNNHSLAER VRREKISERM KLLQDLVPGC  240
NQITGRTVVL DEIINYVQSL QQQVEFLSMK LANVGPESSL DTEQILLTNN SYISSSNILR  300
TRGKGVDSVL AIDPRLTTSH TIPHVMFQLH GTVPTMPKTT SQQLSSLSKV SSRSSKETIS  360
LSFYNDIIES IYVQMK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-137	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-137	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444519.1	0.0	PREDICTED: transcription factor bHLH49 isoform X1
TrEMBL	A0A1S3BA09	0.0	A0A1S3BA09_CUCME; transcription factor bHLH49 isoform X1
STRING	XP_008444519.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24863	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-48	bHLH family protein