PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022450

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 341aa MW: 36842.7 Da PI: 7.0514

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022450	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226	7.3e-70	109	266	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrel......kskkqsalsstklss 93 +g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerqqq aa+++++++++ ++skr+re+ +++++sa+++ +l+s Cla022450 109 AGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEqfrGGENSKRQRETqtaaavTAATASASACPRLPS 208 6899**************************************************99998888766655566666665333322223333333344444 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + le +++P+ev+s+avfrcv+vs++dd++ee+aYqtav+igGhvfkGiLydqG+e Cla022450 209 IT--SGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPE 266 43..3466677*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-68	111	266	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.4E-27	113	155	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.7E-27	217	265	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAGFFYLGGR EGPPNKQEEE EEREQNLFLY RNEEIYNKGF EIWPQQYNNN NNHQQQQPNP 60 SLTNHLSFGV GPSRRSFMIN DPSDEPSRSA FTVMRPAAAA FAAASAATAG GMNCQDCGNQ 120 AKKDCAYLRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QIAALQQQQQ QQEQFRGGEN 180 SKRQRETQTA AAVTAATASA SACPRLPSIT SGLELAQFPS EVNSPAVFRC VKVSAMDDAD 240 EEFAYQTAVN IGGHVFKGIL YDQGPEIRYT AAGESSSGHG GDGSTHPLNL IAGPTSATTS 300 AATSTNPSAA AAAAPLLDPS IYPAPLNAFM AGTQFFPPSR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023546679.1	1e-173	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9FXH7	9e-90	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A0A0LNQ5	1e-154	A0A0A0LNQ5_CUCSA; Uncharacterized protein
STRING	XP_004173338.1	1e-155	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-74	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]