PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022447
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family DBB
Protein Properties Length: 305aa    MW: 32772 Da    PI: 6.3876
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022447genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93e-06443538
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                C+ +e+  +  fC+ ++  lC  C    H+       H+
  Cla022447  4 QCDVCEKGDAAVFCTADEAALCSLCDHRVHHAnklaskHR 43
               7******88*******************964446777776 PP
2zf-B_box247.8e-085495237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
               e+++C+ + e +  lfC++++  lC++C + +H+       H
  Cla022447 54 EAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSAneltmkH 95
               6899*******9*********************655666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000213.96E-6347No hitNo description
SMARTSM003369.7E-6447IPR000315B-box-type zinc finger
SMARTSM003362.7E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.19653100IPR000315B-box-type zinc finger
PfamPF006439.2E-65496IPR000315B-box-type zinc finger
CDDcd000212.03E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKIQCDVCEK GDAAVFCTAD EAALCSLCDH RVHHANKLAS KHRRFSLLRP DAEEAPVCDV  60
CRERRGFLFC QQDRAILCRE CDDPIHSANE LTMKHDRFLL TGIKLSATAA LYAPPPSGEK  120
PVGTGARVVS ESKSKGSVKK AAAVSNASTI WPPSVCVNAP TNITPAAAVN KGGGGQIATG  180
GGGSASSISE YLMETLPGWH FEDFLDSSVS PPFVEFDEGV GFPFVEGDFN GCFSSSERLE  240
LWVPQGPPPA LYNSGLMMNN GLKDTKELGL NSSKVNRVWT DDGFTVPQIT STAPSAGFKR  300
SRPFW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-167LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-167LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444771.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLA0A1S3BBW00.0A0A1S3BBW0_CUCME; B-box zinc finger protein 20-like
STRINGXP_008444771.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-68salt tolerance homolog2