PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022362
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 307aa    MW: 33801.3 Da    PI: 8.7994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022362genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-30143202159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +Cpvk+kv+rs edp++++ tYegeHnh 
  Cla022362 143 VKDGYQWRKYGQKVTKDNPSPRAYYKCSFApSCPVKRKVQRSVEDPSYLIATYEGEHNHA 202
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.347138204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-30140204IPR003657WRKY domain
SuperFamilySSF1182906.28E-26140204IPR003657WRKY domain
SMARTSM007745.0E-34143203IPR003657WRKY domain
PfamPF031061.5E-24144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MESSTTIKTS LDLNFNPPPY TADESPLTHT PSPLKEQAPA ILAEKLNRIS SENQKLNQML  60
GLVVENCNVL QHQVIDLMMK SRKRKAAGCD NYCNFNRSGS DQYCGCCSDD NDSCYNKRPR  120
ENSKPKVMRV LVPTPVSDST LVVKDGYQWR KYGQKVTKDN PSPRAYYKCS FAPSCPVKRK  180
VQRSVEDPSY LIATYEGEHN HAKPNSGIEY QLIGPIHLSS NLDSACGVSS SPSSSVKSPS  240
LMTSIVTNSL KASLPQPETP STTSASASST QKLLVQQMAT LLTKDPNFTR ALATAITGNM  300
VDKEIWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-201422041677Probable WRKY transcription factor 4
2lex_A5e-201422041677Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840141e-159GU984014.1 Cucumis sativus WRKY protein (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022961730.11e-165probable WRKY transcription factor 40
TrEMBLA0A1S3BC941e-149A0A1S3BC94_CUCME; probable WRKY transcription factor 40
STRINGXP_008445262.11e-149(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-65WRKY DNA-binding protein 40